The new ClusPro AbEMap webserver allows users to predict antibody epitopes with the structure of the antigen and the sequence of the desired antibody. The server presents a likelihood score for each antigen residue that indicates if it is part of the epitope, and can complete a calculation in roughly 45-90 minutes. To learn more about the methodology, check out the new papers published in Proteins and Nature Protocols.
The server can be accessed at: https://abemap.cluspro.org/login.php
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